Short-read assembly
Dataset availableSelected paired-end short-read data for de novo genome assembly and quality control. Some samples contain deliberate data-quality problems.
ghrupuzzles
Complex simulated microbial genomics datasets for testing analytical proficiency and bioinformatics pipelines.
Work through short-read assembly, hybrid assembly, genotyping and outbreak analysis. Test your bioinformatics pipelines, assess your team’s proficiency and identify areas for improvement using realistic, reproducible tasks.
Practice with realistic data
Use simulated datasets designed to reflect the complexity of real microbial genomics data. Test your team’s proficiency, benchmark your bioinformatics pipelines and identify areas for improvement.
Hybrid assembly
Dataset availableSelected short- and long-read data for de novo genome assembly and quality control. Some samples contain deliberate data-quality problems.
Genotyping
Dataset availableKlebsiella pneumoniae genome assemblies for genotyping with Kleborate. Some assemblies contain deliberate data-quality problems.
Outbreak analysis
Dataset availableShort-read sequencing data for phylogenetic reconstruction and outbreak-cluster identification. Some samples contain deliberate data-quality problems.